Jatropha Genome Database

JcCA0153321.10 (JcS_106487.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0153321
Scaffold:
JcS_106487 JcCA0153321(-) =JcCB0086351(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9GEP8_POPTR 659 66.7 73.3 (tr|B9GEP8) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_548716 PE=4 SV=1
Arabidopsis_pep AT5G22010.1 560 59.4 70.0 | Symbols: AtRFC1 | AtRFC1 (replication factor C 1); ATP binding / DNA binding / DNA clamp loader/ nucleoside-triphosphatase/ nucleotide binding | chr5:7280632-7287037 REVERSE
soybean_pep Glyma12g10230.1 565 60.1 66.0  
Medicago_pep IMGA|Medtr1g037360.1 55.5 25.9 40.0 nucleoside-triphosphatase/ nucleotide binding, related chr01_pseudomolecule_IMGAG_V3 8761038-8769838 E EGN_Mt090430 20090702
grape_pep GSVIVT01037357001 588 60.2 67.5  
castor_bean_cds --No_Hits--        
castor_bean_pep 31200.m000015 61.2 54.5 69.7 DNA ligase, NAD-dependent, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c04896 1261 98.7 98.7  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0153321.10 length: 588 aa.
IPR001357 BRCT
method AccNumber shortName E-value location
Cellular Component GO:0005622 intracellular    
HMMPfam PF00533 BRCT 1.1e-16 200-274
HMMSmart SM00292 no description 4.6e-14 200-278
ProfileScan PS50172 BRCT 16.010 198-279
superfamily SSF52113 BRCT 1.1e-20 196-277
IPR003593 ATPase, AAA+ type, core
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 no description 5e-06 393-531
IPR003959 ATPase, AAA-type, core
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00004 AAA 4.3e-11 397-508
no_ID  
Gene3D G3DSA:3.40.50.10190 no description 1.4e-20 196-289
Gene3D G3DSA:3.40.50.300 no description 1.8e-27 339-530
HMMPanther PTHR11107 BRCT 4.2e-35 198-278
HMMPanther PTHR11107:SF9 REPLICATION 4.2e-35 198-278
Seg seg seg NA 95-102
128-148
151-177
493-507
superfamily SSF52540 P-loop 6.6e-28 340-538