Jatropha Genome Database

JcCA0153311.10 (JcS_106486.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0153311
Scaffold:
JcS_106486 JcCA0153311(-) =JcCA0288171(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SVV5_RICCO 379 63.3 71.0 (tr|B9SVV5) R2r3-myb transcription factor, putative OS=Ricinus communis GN=RCOM_0128280 PE=4 SV=1
Arabidopsis_pep AT3G12720.1 249 85.9 93.8 | Symbols: ATY53, ATMYB67 | ATMYB67 (MYB DOMAIN PROTEIN 67); DNA binding / transcription factor | chr3:4043407-4044522 REVERSE
soybean_pep Glyma08g17370.1 249 64.6 71.8  
Medicago_pep IMGA|Medtr2g085800.1 261 49.4 58.1 Homeodomain-related; chr02_pseudomolecule_IMGAG_V3 19499269-19501235 H EGN_Mt090430 20090702
grape_pep GSVIVT01010086001 293 52.7 62.7  
castor_bean_cds 27956.m000359 404 88.9 88.9 r2r3-myb transcription factor, putative
castor_bean_pep 27956.m000359 379 63.3 71.0 r2r3-myb transcription factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c07843 79.8 82.6 82.6  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0153311.10 length: 313 aa.
IPR001005 SANT, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMSmart SM00717 no description 3.7e-15 12-62
65-113
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 1e-12 13-82
85-145
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 3.6e-17 11-63
67-115
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 7.8e-14 13-60
66-109
IPR015495 Myb transcription factor
HMMPanther PTHR10641 MYB-RELATED 5.5e-94 5-214
IPR017930 HTH transcriptional regulator, Myb-type, DNA-binding
ProfileScan PS51294 HTH_MYB 18.696 61-115
8-60
no_ID  
HMMPanther PTHR10641:SF30 R2R3-MYB 5.5e-94 5-214
Seg seg seg NA 131-142