Jatropha Genome Database

JcCA0153141.10 (JcS_104949.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0153141
Scaffold:
JcS_104949 JcCB0481571(-) =JcCA0153141(+) =JcCB0449001(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RC63_RICCO 480 51.7 62.0 (tr|B9RC63) Myb, putative OS=Ricinus communis GN=RCOM_1685820 PE=4 SV=1
Arabidopsis_pep AT4G32730.2 249 59.7 75.1 | Symbols: PC-MYB1, MYB3R-1, ATMYB3R-1, ATMYB3R1 | PC-MYB1; DNA binding / transcription coactivator/ transcription factor | chr4:15791039-15795643 FORWARD
soybean_pep Glyma01g42650.1 254 37.2 52.6  
Medicago_pep IMGA|Medtr7g068380.1 225 56.6 70.4 Homeodomain-related; chr07_pseudomolecule_IMGAG_V3 14012824-14020047 E EGN_Mt090430 20090702
grape_pep GSVIVT01019834001 266 48.9 61.3  
castor_bean_cds 30190.m011160 357 82.5 82.5 myb, putative
castor_bean_pep 30190.m011160 480 51.7 62.0 myb, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0153141.10 length: 464 aa.
IPR001005 SANT, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMSmart SM00717 no description 6.2e-16 49-98
101-150
153-201
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 1.6e-14 102-153
150-203
50-100
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 3.1e-15 48-99
100-151
155-203
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 6.5e-14 50-95
102-148
154-196
IPR015495 Myb transcription factor
HMMPanther PTHR10641 MYB-RELATED 3.6e-70 91-206
IPR017930 HTH transcriptional regulator, Myb-type, DNA-binding
ProfileScan PS51294 HTH_MYB 20.696 97-152
45-96
153-203
no_ID  
HMMPanther PTHR10641:SF37 MYB 3.6e-70 91-206