Jatropha Genome Database

JcCA0153071.30 (JcS_104003.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0153071
Scaffold:
JcS_104003 JcCB0136911(+) =JcCA0144801(+) =JcCA0153071(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RLW0_RICCO 336 75.8 84.4 (tr|B9RLW0) RING-H2 finger protein ATL1Q, putative OS=Ricinus communis GN=RCOM_1471270 PE=4 SV=1
Arabidopsis_pep AT1G74410.1 259 60.6 74.4 | Symbols: | zinc finger (C3HC4-type RING finger) family protein | chr1:27965723-27967681 FORWARD
soybean_pep Glyma17g11000.2 223 59.8 72.4  
Medicago_pep IMGA|Medtr5g022920.1 150 38.6 55.0 Zinc finger, RING-type chr05_pseudomolecule_IMGAG_V3 8947700-8945472 F EGN_Mt090430 20090702
grape_pep GSVIVT01007975001 287 66.3 79.5  
castor_bean_cds 30138.m004048 605 87.1 87.1 RING-H2 finger protein ATL1Q, putative
castor_bean_pep 30138.m004048 336 75.8 84.4 RING-H2 finger protein ATL1Q, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0153071.30 length: 240 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00184 no description 4.2e-07 195-236
ProfileScan PS50089 ZF_RING_2 12.386 195-237
IPR018957 Zinc finger, C3HC4 RING-type
HMMPfam PF00097 zf-C3HC4 3.1e-06 195-236
no_ID  
Gene3D G3DSA:3.30.40.10 no description 8.6e-14 188-240
HMMPanther PTHR22764 RING 1.1e-15 195-240
Seg seg seg NA 80-97
superfamily SSF57850 RING/U-box 1.8e-15 188-240