Jatropha Genome Database

JcCA0153071.20 (JcS_104003.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0153071
Scaffold:
JcS_104003 JcCB0136911(+) =JcCA0144801(+) =JcCA0153071(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A5AF05_VITVI 777 59.6 76.6 (tr|A5AF05) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031722 PE=4 SV=1
Arabidopsis_pep AT5G61400.1 570 47.4 65.9 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:24681550-24683514 FORWARD
soybean_pep Glyma06g21110.1 355 47.8 67.0  
Medicago_pep IMGA|Medtr4g155160.1 304 33.1 51.2 Pentatricopeptide repeat chr04_pseudomolecule_IMGAG_V3 38237221-38239764 H EGN_Mt090430 20090702
grape_pep GSVIVT01007974001 652 60.6 77.8  
castor_bean_cds 30138.m004047 585 81.2 81.2 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 30138.m004047 682 67.7 80.4 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0153071.20 length: 659 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.54 125-147
157-185
190-220
225-255
260-290
295-325
331-359
365-395
400-430
435-461
470-497
506-529
554-582
624-653
HMMTigr TIGR00756 PPR: 0.036 155-189
190-224
225-259
260-294
295-329
330-364
365-399
400-434
435-469
470-505
506-540
554-588
589-623
624-658
ProfileScan PS51375 PPR 8.670 153-187
121-151
188-222
223-257
258-292
293-327
328-362
398-432
363-397
433-467
468-503
504-538
552-586
587-621
622-656
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 1.4e-163 109-653
superfamily SSF48452 TPR-like 3.3e-17 327-659
44-355