Jatropha Genome Database

JcCA0153071.10 (JcS_104003.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0153071
Scaffold:
JcS_104003 JcCB0136911(+) =JcCA0144801(+) =JcCA0153071(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A5AF04_VITVI 479 67.1 84.6 (tr|A5AF04) Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_031721 PE=4 SV=1
Arabidopsis_pep AT5G66520.1 233 37.7 57.1 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:26551879-26553741 FORWARD
soybean_pep Glyma17g11010.1 341 59.2 76.5  
Medicago_pep IMGA|Medtr5g020540.1 226 36.3 58.0 Pentatricopeptide repeat chr05_pseudomolecule_IMGAG_V3 7774114-7772558 E EGN_Mt090430 20090702
grape_pep GSVIVT01007972001 388 67.5 83.8  
castor_bean_cds --No_Hits--        
castor_bean_pep 28649.m000213 236 35.0 54.7 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0153071.10 length: 373 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 8e-07 99-124
134-162
202-232
233-261
310-330
338-367
HMMTigr TIGR00756 PPR: 0.0041 98-132
133-167
202-232
233-267
338-370
ProfileScan PS51375 PPR 7.684 96-130
65-95
131-165
200-234
166-199
235-265
266-296
336-370
305-335
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 1.2e-111 1-367
HMMPanther PTHR10483:SF4 SELENIUM-BINDING 1.2e-111 1-367
superfamily SSF48452 TPR-like 1.3e-17 64-369