Jatropha Genome Database

JcCA0152991.30 (JcS_100121.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0152991
Scaffold:
JcS_100121 JcCA0152991(+) =JcCB0152181(-) =JcCB0203531(-) =JcCB0536281(-) =JcCB0075891(+) =JcCA0296361(+) =JcCB0102271(-) =JcCB0455011(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RP47_RICCO 540 84.1 89.0 (tr|B9RP47) Grr1, plant, putative OS=Ricinus communis GN=RCOM_0924020 PE=4 SV=1
Arabidopsis_pep AT2G25490.1 370 60.9 75.8 | Symbols: EBF1, FBL6 | EBF1 (EIN3-BINDING F BOX PROTEIN 1); protein binding / ubiquitin-protein ligase | chr2:10848018-10850275 REVERSE
soybean_pep Glyma14g14410.1 450 70.3 81.7  
Medicago_pep IMGA|Medtr1g013790.1 432 67.8 81.1 Cyclin-like F-box chr01_pseudomolecule_IMGAG_V3 2680576-2684082 E EGN_Mt090430 20090702
grape_pep GSVIVT01035856001 442 71.5 81.1  
castor_bean_cds 29848.m004629 735 84.3 84.3 grr1, plant, putative
castor_bean_pep 29848.m004629 540 84.1 89.0 grr1, plant, putative
JAT_13201ests gi|268523050|gb|FM896493.1|FM896493 50.1 86.0 86.0 FM896493 Jatropha curcas embryo 71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_003719, mRNA sequence
KJC_r1 KJC_c00321 1907 100.0 100.0  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0152991.30 length: 320 aa.
IPR001810 Cyclin-like F-box
method AccNumber shortName E-value location
HMMPfam PF00646 F-box 4.1e-06 69-109
HMMSmart SM00256 no description 0.00015 70-111
IPR006553 Leucine-rich repeat, cysteine-containing subtype
HMMSmart SM00367 no description 0.0084 164-189
190-215
216-241
242-267
268-293
no_ID  
Gene3D G3DSA:3.80.10.10 no description 1.2e-40 59-316
HMMPanther PTHR23125 F-BOX/LEUCINE 1e-62 178-309
HMMPanther PTHR23125:SF68 GRR1, 1e-62 178-309
superfamily SSF52047 RNI-like 5.4e-23 147-317
superfamily SSF81383 F-box 1.1e-08 57-104