Jatropha Genome Database

JcCA0152881.10 (JcS_104684.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0152881
Scaffold:
JcS_104684 JcCB0374621(-) =JcCA0152881(-) =JcCB0445261(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RUB3_RICCO 613 80.8 88.1 (tr|B9RUB3) Cyclic nucleotide-gated ion channel, putative OS=Ricinus communis GN=RCOM_0851240 PE=4 SV=1
Arabidopsis_pep AT5G14870.1 545 70.7 79.3 | Symbols: CNGC18, ATCNGC18 | CNGC18 (CYCLIC NUCLEOTIDE-GATED CHANNEL 18); calmodulin binding / cyclic nucleotide binding / ion channel | chr5:4808268-4810897 REVERSE
soybean_pep Glyma06g08110.1 524 71.0 81.2  
Medicago_pep IMGA|Medtr3g133160.1 501 68.3 78.9 Cyclic nucleotide-binding; Ion transport protein chr03_pseudomolecule_IMGAG_V3 33670090-33666246 H EGN_Mt090430 20090702
grape_pep GSVIVT01032502001 510 68.2 77.3  
castor_bean_cds 29822.m003360 860 87.6 87.6 Cyclic nucleotide-gated ion channel, putative
castor_bean_pep 29822.m003360 613 80.8 88.1 Cyclic nucleotide-gated ion channel, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0152881.10 length: 361 aa.
IPR000048 IQ calmodulin-binding region
method AccNumber shortName E-value location
ProfileScan PS50096 IQ 6.614 255-283
IPR000595 Cyclic nucleotide-binding
HMMPfam PF00027 cNMP_binding 1.2e-10 142-235
HMMSmart SM00100 no description 2e-12 119-250
ProfileScan PS50042 CNMP_BINDING_3 11.689 119-223
IPR014710 RmlC-like jelly roll fold
Gene3D G3DSA:2.60.120.10 no description 8.9e-20 102-256
IPR018490 Cyclic nucleotide-binding-like
superfamily SSF51206 cAMP-binding 1.3e-39 44-252
no_ID  
HMMPanther PTHR10217 VOLTAGE 3.9e-180 1-355
HMMPanther PTHR10217:SF7 CYCLIC 3.9e-180 1-355
Seg seg seg NA 291-300