Jatropha Genome Database

JcCA0150831.10 (JcS_104271.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0150831
Scaffold:
JcS_104271 JcCB0231041(-) =JcCA0150831(-) =JcCA0028051(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9T1G4_RICCO 1440 83.1 88.7 (tr|B9T1G4) Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1643590 PE=4 SV=1
Arabidopsis_pep AT1G79490.1 1305 74.6 85.2 | Symbols: EMB2217 | EMB2217 (embryo defective 2217) | chr1:29900617-29903127 FORWARD
soybean_pep Glyma19g07810.1 1159 77.6 86.0  
Medicago_pep IMGA|Medtr3g138450.1 157 27.7 46.3 Pentatricopeptide repeat chr03_pseudomolecule_IMGAG_V3 35394297-35398369 E EGN_Mt090430 20090702
grape_pep GSVIVT01020873001 1259 79.6 87.2  
castor_bean_cds 30182.m000133 2181 87.6 87.6 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 30182.m000133 1440 83.1 88.7 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c09093 743 99.5 99.5  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0150831.10 length: 841 aa.
IPR002625 Smr protein/MutS2 C-terminal
method AccNumber shortName E-value location
HMMSmart SM00463 no description 4.5e-11 712-791
ProfileScan PS50828 SMR 13.552 715-791
IPR002885 Pentatricopeptide repeat
HMMPfam PF01535 PPR 0.034 285-311
320-349
356-384
390-419
426-454
459-488
494-524
HMMTigr TIGR00756 PPR: 1.2 249-283
284-318
319-353
354-388
389-423
424-458
459-493
494-528
670-704
ProfileScan PS51375 PPR 5.448 209-243
247-281
282-316
317-351
352-386
387-421
422-456
457-491
492-526
561-595
668-702
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 1.9e-98 180-610
Seg seg seg NA 670-681
superfamily SSF48452 TPR-like 4.9e-23 182-551