Jatropha Genome Database

JcCA0149441.10 (JcS_100034.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0149441
Scaffold:
JcS_100034 JcCB0189361(+) =JcCA0199801(-) =JcCB0216831(+) =JcCA0149441(-) =JcCA0036251(+) =JcCA0047351(-) =JcCA0076481(-) =JcCB0268591(-) =JcCB0646891(-) =JcCA0075411(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9R986_RICCO 274 68.8 73.3 (tr|B9R986) DNA binding protein, putative OS=Ricinus communis GN=RCOM_1514810 PE=4 SV=1
Arabidopsis_pep AT3G47640.1 169 49.1 59.5 | Symbols: | basic helix-loop-helix (bHLH) family protein | chr3:17568035-17569101 FORWARD
soybean_pep Glyma05g01150.1 213 58.0 67.9  
Medicago_pep IMGA|Medtr8g112550.1 228 61.2 70.1 Helix-loop-helix DNA-binding chr08_pseudomolecule_IMGAG_V3 25287699-25285553 F EGN_Mt090430 20090702
grape_pep GSVIVT01011386001 182 51.0 66.7  
castor_bean_cds 30147.m014112 182 81.8 81.8 DNA binding protein, putative
castor_bean_pep 30147.m014112 274 68.8 73.3 DNA binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c11502 1015 99.8 99.8  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0149441.10 length: 309 aa.
IPR011598 Helix-loop-helix DNA-binding
method AccNumber shortName E-value location
Cellular Component GO:0005634 nucleus    
Molecular Function GO:0030528 transcription regulator activity    
Biological Process GO:0045449 regulation of transcription    
superfamily SSF47459 HLH, 2e-08 113-188
no_ID  
Coil coil coiled-coil NA 157-185
192-213
Seg seg seg NA 48-55
87-103
133-146