Jatropha Genome Database

JcCA0149281.10 (JcS_100808.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0149281
Scaffold:
JcS_100808 JcCA0149281(-) =JcCB0352111(+) =JcCA0122171(+) =JcCA0109511(+) =JcCB0078031(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl D7TI88_VITVI 1143 63.2 75.5 (tr|D7TI88) Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00033428001 PE=4 SV=1
Arabidopsis_pep AT3G11960.1 1032 59.7 72.2 | Symbols: | cleavage and polyadenylation specificity factor (CPSF) A subunit C-terminal domain-containing protein | chr3:3786431-3793160 FORWARD
soybean_pep Glyma03g36490.3 1121 63.1 74.6  
Medicago_pep IMGA|AC235488_30.1 1095 60.7 74.9 CPSF A subunit, C-terminal AC235488.1 132000-145786 E EGN_Mt090430 20090702
grape_pep GSVIVT01033428001 1143 63.2 75.5  
castor_bean_cds 27553.m000320 842 85.1 85.1 spliceosomal protein sap, putative
castor_bean_pep 27553.m000320 811 69.4 77.4 spliceosomal protein sap, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0149281.10 length: 885 aa.
no_ID  
method AccNumber shortName E-value location
HMMPanther PTHR10644 DNA 4.3e-104 36-880
HMMPanther PTHR10644:SF1 SPLICEOSOMAL 4.3e-104 36-880
Seg seg seg NA 9-19
61-76
214-222