Jatropha Genome Database

JcCA0146401.10 (JcS_100647.60)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0146401
Scaffold:
JcS_100647 JcCB0057761(-) =JcCB0391201(-) =JcCD0148761(+) =JcCA0018861(+) =JcCA0146401(+) =JcCA0149021(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RTA4_RICCO 373 91.3 92.2 (tr|B9RTA4) Ribosomal protein L19 OS=Ricinus communis GN=RCOM_0682590 PE=3 SV=1
Arabidopsis_pep AT3G16780.1 327 80.8 84.1 | Symbols: | 60S ribosomal protein L19 (RPL19B) | chr3:5708982-5710249 FORWARD
soybean_pep Glyma19g39570.1 350 85.4 87.7  
Medicago_pep IMGA|Medtr1g107930.1 335 88.9 90.5 Ribosomal protein L19e; chr01_pseudomolecule_IMGAG_V3 22886419-22884241 E EGN_Mt090430 20090702
grape_pep GSVIVT01035096001 345 88.3 90.3  
castor_bean_cds 29726.m004096 761 90.5 90.5 60S ribosomal protein L19, putative
castor_bean_pep 29726.m004096 373 91.3 92.2 60S ribosomal protein L19, putative
JAT_13201ests gi|268526447|gb|FM895301.1|FM895301 904 98.5 98.5 FM895301 Jatropha curcas embryo 71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_002106, mRNA sequence
KJC_r1 KJC_c00175 1152 98.2 98.2  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0146401.10 length: 206 aa.
IPR000196 Ribosomal protein L19/L19e
method AccNumber shortName E-value location
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
HMMPfam PF01280 Ribosomal_L19e 2.5e-65 3-149
PatternScan PS00526 RIBOSOMAL_L19E NA 7-26
superfamily SSF48140 Ribosomal 8.4e-62 2-144
IPR015972 Ribosomal protein L19/L19e, domain 1
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
Gene3D G3DSA:1.10.1650.10 no description 1.2e-19 2-56
IPR015974 Ribosomal protein L19/L19e, domain 3
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
Gene3D G3DSA:1.10.1200.60 no description 1.5e-15 90-149
no_ID  
HMMPanther PTHR10722 60S 6.9e-116 1-203
Seg seg seg NA 94-107