Jatropha Genome Database

JcCA0145721.10 (JcS_101692.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0145721
Scaffold:
JcS_101692 JcCA0261101(-) =JcCB0897851(+) =JcCA0145721(+) =JcCA0200941(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RZY6_RICCO 206 66.1 72.4 (tr|B9RZY6) Neurobeachin, putative OS=Ricinus communis GN=RCOM_1002950 PE=4 SV=1
Arabidopsis_pep AT5G18525.1 149 51.2 60.5 | Symbols: | ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase | chr5:6146932-6153658 REVERSE
soybean_pep Glyma20g28920.1 157 57.0 70.3  
Medicago_pep IMGA|Medtr2g014320.1 50.1 29.1 49.5 Photosynthetic reaction centre, cytochrome c subunit; WD40-like chr02_pseudomolecule_IMGAG_V3 3615244-3611030 E EGN_Mt090430 20090702
grape_pep GSVIVT01017603001 176 58.0 67.2  
castor_bean_cds 29889.m003377 351 86.5 86.5 neurobeachin, putative
castor_bean_pep 29889.m003377 206 66.1 72.4 neurobeachin, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0145721.10 length: 154 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
HMMSmart SM00320 no description 52 34-72
113-154
IPR011046 WD40 repeat-like-containing domain
superfamily SSF50978 WD40 1.1e-16 13-153
IPR015943 WD40/YVTN repeat-like-containing domain
Gene3D G3DSA:2.130.10.10 no description 2e-12 14-152
IPR017986 WD40-repeat-containing domain
ProfileScan PS50294 WD_REPEATS_REGION 11.708 13-81
IPR019775 WD40 repeat, conserved site
PatternScan PS00678 WD_REPEATS_1 NA 59-73
IPR019781 WD40 repeat, subgroup
HMMPfam PF00400 WD40 0.94 36-72
130-152
IPR019782 WD40 repeat 2
ProfileScan PS50082 WD_REPEATS_2 11.277 41-81
no_ID  
HMMPanther PTHR19855 WD40 6.3e-07 18-76
HMMPanther PTHR19855:SF11 WD40 6.3e-07 18-76