Jatropha Genome Database

JcCA0144561.10 (JcS_100524.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0144561
Scaffold:
JcS_100524 JcCB0181921(-) =JcCB0104981(-) =JcCA0144561(-) =JcCB0174101(-) =JcCB0156001(-) =JcCA0306831(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9IJR9_POPTR 1303 90.0 94.2 (tr|B9IJR9) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_577561 PE=4 SV=1
Arabidopsis_pep AT1G61010.3 1249 84.7 92.4 | Symbols: CPSF73-I | CPSF73-I (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 73-I); protein binding | chr1:22474954-22477660 REVERSE
soybean_pep Glyma12g29040.1 1201 82.9 90.9  
Medicago_pep IMGA|Medtr2g006480.1 1178 81.1 90.1 Beta-lactamase-like; RNA-metabolising metallo-beta-lactamase chr02_pseudomolecule_IMGAG_V3 662093-666038 E EGN_Mt090430 20090702
grape_pep GSVIVT01023351001 1086 79.3 84.9  
castor_bean_cds 30226.m002028 1179 89.7 89.7 Cleavage and polyadenylation specificity factor 73 kDa subunit, putative
castor_bean_pep 30226.m002028 723 97.1 98.3 Cleavage and polyadenylation specificity factor 73 kDa subunit, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0144561.10 length: 694 aa.
IPR001279 Beta-lactamase-like
method AccNumber shortName E-value location
Molecular Function GO:0016787 hydrolase activity    
HMMSmart SM00849 no description 5.3e-13 36-224
IPR011108 RNA-metabolising metallo-beta-lactamase
HMMPfam PF07521 RMMBL 2.2e-12 394-433
IPR021718 Pre-mRNA 3'-end-processing endonuclease polyadenylation factor C-term
HMMPfam PF11718 CPSF73-100_C 3e-49 487-689
no_ID  
Gene3D G3DSA:3.60.15.10 no description 2.4e-15 24-249
HMMPanther PTHR11203 CLEAVAGE 0 49-639
HMMPanther PTHR11203:SF11 CLEAVAGE 0 49-639
HMMPfam PF00753 Lactamase_B 1.4e-19 33-203
HMMPfam PF10996 Beta-Casp 5.4e-29 258-379
Seg seg seg NA 605-626
superfamily SSF56281 Metallo-hydrolase/oxidoreductase 1.2e-49 24-274