Jatropha Genome Database

JcCA0142031.30 (JcS_101556.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0142031
Scaffold:
JcS_101556 JcCA0142031(-) =JcCB0162951(-) =JcCA0269931(-) =JcCB0698781(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RDR1_RICCO 538 74.5 81.3 (tr|B9RDR1) Protein AFR, putative OS=Ricinus communis GN=RCOM_1615150 PE=4 SV=1
Arabidopsis_pep AT3G61350.1 324 47.7 63.5 | Symbols: SKIP4 | SKIP4 (SKP1 INTERACTING PARTNER 4) | chr3:22703203-22704374 FORWARD
soybean_pep Glyma07g07780.1 422 56.8 70.3  
Medicago_pep IMGA|Medtr8g119860.1 111 26.6 44.5 Cyclin-like F-box; chr08_pseudomolecule_IMGAG_V3 27289161-27291907 E EGN_Mt090430 20090702
grape_pep GSVIVT01026912001 511 67.0 77.9  
castor_bean_cds 30174.m009020 565 87.2 87.2 Protein AFR, putative
castor_bean_pep 30174.m009020 538 74.5 81.3 Protein AFR, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0142031.30 length: 375 aa.
IPR001810 Cyclin-like F-box
method AccNumber shortName E-value location
HMMPfam PF00646 F-box 4.8e-05 26-62
HMMSmart SM00256 no description 0.003 29-68
IPR006652 Kelch repeat type 1
HMMPfam PF01344 Kelch_1 2.3e-06 177-217
IPR011043 Galactose oxidase/kelch, beta-propeller
superfamily SSF50965 Galactose 9.9e-21 46-343
IPR013089 Kelch related
HMMPanther PTHR23230 KELCH-RELATED 5.8e-06 180-263
IPR015915 Kelch-type beta propeller
Gene3D G3DSA:2.120.10.80 no description 8.6e-22 74-333
no_ID  
HMMPanther PTHR23230:SF184KELCH-RELATED T[180-263] 5.8e-06