Jatropha Genome Database

JcCA0140991.10 (JcS_104562.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0140991
Scaffold:
JcS_104562 JcCB0334811(+) =JcCA0140991(-) =JcCA0150541(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9I2L1_POPTR 323 59.9 66.9 (tr|B9I2L1) Predicted protein OS=Populus trichocarpa GN=MYB142 PE=4 SV=1
Arabidopsis_pep AT1G68320.1 235 52.2 66.0 | Symbols: MYB62, AtMYB62, BW62B, BW62C | MYB62 (myb domain protein 62); DNA binding / transcription factor | chr1:25603842-25604884 FORWARD
soybean_pep Glyma05g35050.1 271 49.8 60.2  
Medicago_pep IMGA|Medtr1g140720.1 252 80.4 92.0 Phosphoglycerate/bisphosphoglycerate mutase; Homeodomain-like; chr01_pseudomolecule_IMGAG_V3 31209290-31207878 E EGN_Mt090430 20090702
grape_pep GSVIVT01008303001 295 54.4 65.2  
castor_bean_cds 28271.m000023 341 85.3 85.3 DNA binding protein, putative
castor_bean_pep 28271.m000023 282 62.4 70.7 DNA binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c11167 52.0 85.5 85.5  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0140991.10 length: 287 aa.
IPR001005 SANT, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMSmart SM00717 no description 1.6e-14 25-75
78-126
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 2.8e-09 26-96
85-135
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 1.6e-15 24-76
80-128
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 3.3e-14 26-73
79-122
IPR015495 Myb transcription factor
HMMPanther PTHR10641 MYB-RELATED 2.8e-75 24-279
IPR017930 HTH transcriptional regulator, Myb-type, DNA-binding
ProfileScan PS51294 HTH_MYB 17.350 74-128
21-73
no_ID  
Seg seg seg NA 3-17
159-169
185-200