| JcS_100401 | JcCA0139851(-) =JcCB0492621(-) =JcCB0318551(-) =JcCB0550651(-) =JcCA0060621(+) =JcPR01E1J32(+) |
| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| trembl | Q9ZRJ0_TOBAC | 422 | 70.8 | 83.2 | (tr|Q9ZRJ0) Retrotransposon Tto1 DNA OS=Nicotiana tabacum PE=4 SV=1 |
| Arabidopsis_pep | ATMG00300.1 | 73.2 | 38.4 | 50.0 | | Symbols: ORF145A | hypothetical protein | chrM:89617-90054 REVERSE |
| soybean_pep | Glyma03g04980.1 | 208 | 41.7 | 57.6 | |
| Medicago_pep | IMGA|Medtr2g104160.1 | 134 | 34.0 | 50.2 | Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold chr02_pseudomolecule_IMGAG_V3 24496395-24493968 H EGN_Mt090430 20090702 |
| grape_pep | GSVIVT01014104001 | 209 | 37.8 | 57.8 | |
| castor_bean_cds | --No_Hits-- | ||||
| castor_bean_pep | --No_Hits-- | ||||
| JAT_13201ests | gi|268518791|gb|FM889034.1|FM889034 | 557 | 91.3 | 91.3 | FM889034 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002587, mRNA sequence |
| KJC_r1 | --No_Hits-- |
| JcCA0139851.20 | length: 820 aa. | |||
| IPR001584 | Integrase, catalytic core | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0003677 | DNA binding | ||
| Biological Process | GO:0015074 | DNA integration | ||
| HMMPfam | PF00665 | rve | 3.4e-29 | 355-466 |
| ProfileScan | PS50994 | INTEGRASE | 19.818 | 344-513 |
| IPR012337 | Polynucleotidyl transferase, ribonuclease H fold | |||
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| superfamily | SSF53098 | Ribonuclease | 9.5e-35 | 345-500 |
| IPR013103 | Reverse transcriptase, RNA-dependent DNA polymerase | |||
| HMMPfam | PF07727 | RVT_2 | 3.2e-11 | 772-810 |
| no_ID | ||||
| Gene3D | G3DSA:3.30.420.10 | no description | 8.6e-23 | 372-493 |
| HMMPanther | PTHR11439 | GAG-POL-RELATED | 5.7e-94 | 228-803 |
| Seg | seg | seg | NA | 138-149 556-569 594-615 |