Jatropha Genome Database

JcCA0138711.10 (JcS_103902.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0138711
Scaffold:
JcS_103902 JcCB0101961(+) =JcCA0138711(+) =JcCB0289311(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9SB39_RICCO 214 87.0 93.0 (tr|B9SB39) Myb81, putative OS=Ricinus communis GN=RCOM_0783660 PE=4 SV=1
Arabidopsis_pep AT3G11440.1 160 65.5 76.7 | Symbols: ATMYB65, MYB65 | MYB65 (MYB DOMAIN PROTEIN 65); DNA binding / transcription factor | chr3:3603056-3604929 FORWARD
soybean_pep Glyma13g04030.1 176 90.8 96.6  
Medicago_pep IMGA|Medtr3g068960.1 157 81.9 92.8 Homeodomain-related; chr03_pseudomolecule_IMGAG_V3 16390027-16386600 E EGN_Mt090430 20090702
grape_pep GSVIVT01012447001 172 69.7 78.7  
castor_bean_cds 29785.m000932 323 89.8 89.8 myb81, putative
castor_bean_pep 29785.m000932 214 87.0 93.0 myb81, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0138711.10 length: 118 aa.
IPR001005 SANT, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMSmart SM00717 no description 2.6 32-82
85-117
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 6e-23 33-114
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 0.00097 31-83
87-113
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 5.5e-07 33-80
86-116
IPR015495 Myb transcription factor
HMMPanther PTHR10641 MYB-RELATED 2.3e-59 31-113
IPR017930 HTH transcriptional regulator, Myb-type, DNA-binding
ProfileScan PS51294 HTH_MYB 12.206 28-84
85-118
no_ID  
HMMPanther PTHR10641:SF30 R2R3-MYB 2.3e-59 31-113