Jatropha Genome Database

JcCA0136621.10 (JcS_100419.60)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0136621
Scaffold:
JcS_100419 JcCA0225811(+) =JcCA0264101(-) =JcCA0077451(+) =JcCA0136621(-) =JcCB0506361(+) =JcCA0266291(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9S2W7_RICCO 316 79.6 92.3 (tr|B9S2W7) 8-oxoguanine DNA glycosylase, putative OS=Ricinus communis GN=RCOM_0563200 PE=4 SV=1
Arabidopsis_pep AT1G21710.1 261 65.9 82.1 | Symbols: OGG1, ATOGG1 | OGG1 (8-OXOGUANINE-DNA GLYCOSYLASE 1); oxidized purine base lesion DNA N-glycosylase | chr1:7624439-7625869 FORWARD
soybean_pep Glyma06g12160.1 256 65.9 78.0  
Medicago_pep IMGA|Medtr3g100560.1 259 67.8 81.1 N-glycosylase/DNA lyase, related chr03_pseudomolecule_IMGAG_V3 24115405-24112945 E EGN_Mt090430 20090702
grape_pep GSVIVT01008832001 77.4 71.1 91.1  
castor_bean_cds 29648.m002007 168 79.3 79.3 8-oxoguanine DNA glycosylase, putative
castor_bean_pep 29648.m002007 316 79.6 92.3 8-oxoguanine DNA glycosylase, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0136621.10 length: 264 aa.
IPR003265 HhH-GPD domain
method AccNumber shortName E-value location
Biological Process GO:0006284 base-excision repair    
HMMPfam PF00730 HhH-GPD 1.2e-05 185-244
IPR011257 DNA glycosylase
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0006281 DNA repair    
superfamily SSF48150 DNA-glycosylase 5.2e-10 178-244
IPR012294 Transcription factor TFIID, C-terminal/DNA glycosylase, N-terminal
Molecular Function GO:0003677 DNA binding    
superfamily SSF55945 TATA-box 5.1e-25 55-177
IPR012904 8-oxoguanine DNA glycosylase, N-terminal
Molecular Function GO:0003684 damaged DNA binding    
Biological Process GO:0006289 nucleotide-excision repair    
Molecular Function GO:0008534 oxidized purine base lesion DNA N-glycosylase activity    
HMMPfam PF07934 OGG_N 4.7e-23 76-183
no_ID  
Gene3D G3DSA:1.10.340.30 no description 4.9e-15 178-244
Gene3D G3DSA:3.30.310.40 no description 3.3e-07 57-148
HMMPanther PTHR10242 8-OXOGUANINE 4e-31 69-244
Seg seg seg NA 9-49