Jatropha Genome Database

JcCA0134721.20 (JcS_110587.30)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0134721
Scaffold:
JcS_110587 JcCB0533691(-) =JcCA0134721(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl Q2HS45_MEDTR 417 41.9 60.3 (tr|Q2HS45) RNA-directed DNA polymerase (Reverse transcriptase) OS=Medicago truncatula GN=MtrDRAFT_AC157503g30v2 PE=4 SV=2
Arabidopsis_pep AT4G29090.1 124 31.3 51.5 | Symbols: | reverse transcriptase, putative / RNA-dependent DNA polymerase, putative | chr4:14333528-14335255 FORWARD
soybean_pep Glyma13g22960.1 216 30.7 47.7  
Medicago_pep IMGA|Medtr2g117110.1 418 41.9 60.3 RNA-directed DNA polymerase (Reverse transcriptase); Hemopexin; Polynucleotidyl transferase, Ribonuclease H fold chr02_pseudomolecule_IMGAG_V3 27457173-27452820 H EGN_Mt090430 20090702
grape_pep GSVIVT01004252001 92.4 25.5 45.3  
castor_bean_cds --No_Hits--        
castor_bean_pep 29703.m001529 153 43.7 62.9 conserved hypothetical protein
JAT_13201ests gi|268520299|gb|FM890147.1|FM890147 163 87.1 87.1 FM890147 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003948, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0134721.20 length: 790 aa.
IPR000477 RNA-directed DNA polymerase (reverse transcriptase)
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0003964 RNA-directed DNA polymerase activity    
Biological Process GO:0006278 RNA-dependent DNA replication    
HMMPfam PF00078 RVT_1 3.7e-29 6-182
ProfileScan PS50878 RT_POL 9.429 1-214
IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related
HMMPanther PTHR19446 REVERSE 3.1e-151 4-502
no_ID  
HMMPanther PTHR19446:SF34 NON-LTR 3.1e-151 4-502
Seg seg seg NA 335-344