Jatropha Genome Database

JcCA0132491.10 (JcS_100397.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0132491
Scaffold:
JcS_100397 JcCA0132491(-) =JcCA0147251(+) =JcCA0029371(-) =JcPR13H21R2(-) =JcCB0053361(-) =JcCA0207751(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9T8Y6_RICCO 1545 78.8 86.0 (tr|B9T8Y6) Multidrug resistance-associated protein 2, 6 (Mrp2, 6), abc-transoprter, putative (Fragment) OS=Ricinus communis GN=RCOM_1805450 PE=4 SV=1
Arabidopsis_pep AT3G60160.1 1216 62.4 74.9 | Symbols: ATMRP9 | ATMRP9; ATPase, coupled to transmembrane movement of substances | chr3:22223829-22229195 REVERSE
soybean_pep Glyma07g12680.1 1310 65.9 78.8  
Medicago_pep IMGA|Medtr5g034390.1 780 43.8 60.5 Cyclic peptide transporter chr05_pseudomolecule_IMGAG_V3 14123515-14117033 E EGN_Mt090430 20090702
grape_pep GSVIVT01014628001 673 44.5 59.2  
castor_bean_cds 30869.m000035 1848 86.7 86.7 multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative
castor_bean_pep 30869.m000035 1545 78.8 86.0 multidrug resistance-associated protein 2, 6 (mrp2, 6), abc-transoprter, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0132491.10 length: 959 aa.
IPR001140 ABC transporter, transmembrane domain
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
HMMPfam PF00664 ABC_membrane 3.6e-12 196-462
857-958
IPR003439 ABC transporter-like
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
HMMPfam PF00005 ABC_tran 1e-14 551-661
ProfileScan PS50893 ABC_TRANSPORTER_2 21.702 509-732
IPR003593 ATPase, AAA+ type, core
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 no description 3.1e-13 536-709
IPR011527 ABC transporter, transmembrane domain, type 1
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006810 transport    
Cellular Component GO:0016021 integral to membrane    
Molecular Function GO:0042626 ATPase activity, coupled to transmembrane movement of substances    
Biological Process GO:0055085 transmembrane transport    
superfamily SSF90123 Multidrug 3.2e-23 171-501
793-958
IPR017871 ABC transporter, conserved site
Molecular Function GO:0005524 ATP binding    
Molecular Function GO:0016887 ATPase activity    
PatternScan PS00211 ABC_TRANSPORTER_1 NA 634-648
IPR017940 ABC transporter integral membrane type 1
ProfileScan PS50929 ABC_TM1F 20.465 194-475
822-959
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1e-64 474-759
HMMPanther PTHR19242 ATP-BINDING 0 116-959
HMMPanther PTHR19242:SF20 MULTIDRUG 0 116-959
Seg seg seg NA 329-342
544-555
859-877
superfamily SSF52540 P-loop 2.6e-55 509-723