Jatropha Genome Database

JcCA0132021.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0132021
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9S8G8_RICCO 243 88.4 92.0 (tr|B9S8G8) Mads box protein, putative OS=Ricinus communis GN=RCOM_1252910 PE=4 SV=1
Arabidopsis_pep AT4G18960.1 189 63.5 80.4 | Symbols: AG | AG (AGAMOUS); DNA binding / transcription factor | chr4:10383917-10388272 FORWARD
soybean_pep Glyma15g09500.1 194 69.3 81.4  
Medicago_pep IMGA|Medtr4g136380.1 185 65.7 82.1 Transcription factor, MADS-box; Transcription factor, K-box chr04_pseudomolecule_IMGAG_V3 33294099-33299967 E EGN_Mt090430 20090702
grape_pep GSVIVT01021303001 201 72.5 84.1  
castor_bean_cds 30026.m001501 349 85.7 85.7 mads box protein, putative
castor_bean_pep 30026.m001501 243 88.4 92.0 mads box protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0132021.10 length: 138 aa.
IPR002487 Transcription factor, K-box
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF01486 K-box 1.2e-29 2-85
ProfileScan PS51297 K_BOX 14.481 1-89
no_ID  
Coil coil coiled-coil NA 6-27
HMMPanther PTHR11945 MADS 6e-21 1-109
HMMPanther PTHR11945:SF19 MADS 6e-21 1-109