Jatropha Genome Database

JcCA0128121.10 (JcS_100044.60)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0128121
Scaffold:
JcS_100044 JcCB0760911(+) =JcCB0892281(+) =JcPR03BRZWZ(+) =JcCA0279321(+) =JcCA0259681(-) =JcCB0434201(-) =JcCB0411911(+) =JcCA0128121(-) =JcCB0013521(-) =JcCB0463071(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9HFU9_POPTR 1015 81.3 91.7 (tr|B9HFU9) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_562662 PE=4 SV=1
Arabidopsis_pep AT2G22070.1 868 70.9 84.6 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr2:9383602-9385962 FORWARD
soybean_pep Glyma02g13130.1 827 69.6 83.2  
Medicago_pep IMGA|CU179634_15.1 536 45.2 65.1 pentatricopeptide, putative CU179634.6 64404-61990 H EGN_Mt090430 20090702
grape_pep GSVIVT01022202001 665 57.4 73.2  
castor_bean_cds 48562.m000006 1110 87.1 87.1 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 48562.m000006 697 86.0 93.0 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0128121.10 length: 579 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0056 7-36
37-64
142-170
172-201
245-267
274-304
347-370
412-441
HMMTigr TIGR00756 PPR: 0.13 6-36
37-72
141-171
172-206
274-308
309-344
345-376
411-445
ProfileScan PS51375 PPR 9.624 35-70
4-34
170-204
139-169
106-136
71-105
272-306
240-270
343-373
307-337
409-443
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 4.1e-259 1-579
HMMPanther PTHR10483:SF4 SELENIUM-BINDING 4.1e-259 1-579
superfamily SSF48452 TPR-like 4.3e-08 140-434
3-132