Jatropha Genome Database

JcCA0122251.10 (JcS_101767.60)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0122251
Scaffold:
JcS_101767 JcCA0300071(-) =JcCA0146311(+) =JcCA0249291(+) =JcCA0122251(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9HGC9_POPTR 301 77.1 81.6 (tr|B9HGC9) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_819877 PE=4 SV=1
Arabidopsis_pep AT5G64740.1 242 64.8 73.2 | Symbols: CESA6, IXR2, E112, PRC1 | CESA6 (CELLULOSE SYNTHASE 6); cellulose synthase/ transferase, transferring glycosyl groups | chr5:25881555-25886333 FORWARD
soybean_pep Glyma08g15380.1 268 69.3 77.7  
Medicago_pep IMGA|Medtr4g141680.1 249 65.4 75.4 Zinc finger, RING-type; Cellulose synthase chr04_pseudomolecule_IMGAG_V3 35036331-35029774 E EGN_Mt090430 20090702
grape_pep GSVIVT01034552001 244 66.5 73.2  
castor_bean_cds 29863.m001055 222 84.2 84.2 Cellulose synthase A catalytic subunit 6 [UDP-forming], putative
castor_bean_pep 29863.m001055 229 62.6 68.7 Cellulose synthase A catalytic subunit 6 [UDP-forming], putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c02030 609 99.7 99.7  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0122251.10 length: 179 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50089 ZF_RING_2 8.890 39-85
no_ID  
Gene3D G3DSA:3.30.40.10 no description 4.9e-35 21-113
HMMPanther PTHR13301 X-BOX 1.7e-33 1-116
HMMPanther PTHR13301:SF1 TGACG-MOTIF-BINDING 1.7e-33 1-116
Seg seg seg NA 98-114
151-161
superfamily SSF57850 RING/U-box 3.1e-14 26-106