Jatropha Genome Database

JcCA0122171.10 (JcS_100808.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0122171
Scaffold:
JcS_100808 JcCA0149281(-) =JcCB0352111(+) =JcCA0122171(+) =JcCA0109511(+) =JcCB0078031(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9T018_RICCO 180 81.3 85.0 (tr|B9T018) Cofactor required for Sp1 transcriptional activation subunit, putative OS=Ricinus communis GN=RCOM_0036740 PE=4 SV=1
Arabidopsis_pep AT5G03220.1 155 72.0 78.5 | Symbols: | transcriptional co-activator-related | chr5:767617-768584 REVERSE
soybean_pep Glyma07g03300.2 172 77.6 83.2  
Medicago_pep --No_Hits--        
grape_pep GSVIVT01033427001 171 79.4 82.2  
castor_bean_cds 27553.m000321 333 88.6 88.6 Cofactor required for Sp1 transcriptional activation subunit, putative
castor_bean_pep 27553.m000321 180 81.3 85.0 Cofactor required for Sp1 transcriptional activation subunit, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0122171.10 length: 107 aa.
IPR009244 Mediator complex, subunit Med7
method AccNumber shortName E-value location
Biological Process GO:0006357 regulation of transcription from RNA polymerase II promoter    
Molecular Function GO:0016455 RNA polymerase II transcription mediator activity    
Cellular Component GO:0016592 mediator complex    
HMMPanther PTHR21428 FAMILY 1.6e-70 6-107
HMMPfam PF05983 Med7 3.4e-27 3-107
no_ID  
Coil coil coiled-coil NA 67-88
HMMPanther PTHR21428:SF6 SUBFAMILY 1.6e-70 6-107
Seg seg seg NA 6-13
27-32