Jatropha Genome Database

JcCA0121401.10  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0121401
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9T7Y5_RICCO 541 84.1 89.4 (tr|B9T7Y5) Transcription factor ICE1, putative OS=Ricinus communis GN=RCOM_0275800 PE=4 SV=1
Arabidopsis_pep AT2G31210.1 276 47.7 62.8 | Symbols: | basic helix-loop-helix (bHLH) family protein | chr2:13296655-13298139 FORWARD
soybean_pep Glyma05g26490.1 373 63.9 75.6  
Medicago_pep IMGA|AC235671_17.1 339 60.5 73.1 Helix-loop-helix DNA-binding AC235671.2 74985-73151 H EGN_Mt090430 20090702
grape_pep GSVIVT01011330001 380 67.3 75.5  
castor_bean_cds 28567.m000052 347 88.2 88.2 Transcription factor ICE1, putative
castor_bean_pep 28567.m000052 541 84.1 89.4 Transcription factor ICE1, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0121401.10 length: 347 aa.
IPR001092 Helix-loop-helix DNA-binding domain
method AccNumber shortName E-value location
Molecular Function GO:0030528 transcription regulator activity    
Biological Process GO:0045449 regulation of transcription    
HMMPfam PF00010 HLH 2.9e-11 148-193
HMMSmart SM00353 no description 6.9e-11 150-199
ProfileScan PS50888 HLH 11.357 139-194
IPR011598 Helix-loop-helix DNA-binding
Cellular Component GO:0005634 nucleus    
Molecular Function GO:0030528 transcription regulator activity    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:4.10.280.10 no description 2e-06 140-224
superfamily SSF47459 HLH, 2.9e-14 142-226
no_ID  
Coil coil coiled-coil NA 190-211
Seg seg seg NA 13-32