| JcS_100521 | JcCB0168061(+) =JcCB0265081(+) =JcCB0061481(-) =JcCA0097961(+) =JcCB0580021(+) =JcCB0693041(-) |
| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| trembl | B9SGJ4_RICCO | 553 | 94.1 | 94.1 | (tr|B9SGJ4) Splicing factor u2af large subunit, putative OS=Ricinus communis GN=RCOM_0553420 PE=4 SV=1 |
| Arabidopsis_pep | AT4G36690.3 | 502 | 85.3 | 90.1 | | Symbols: ATU2AF65A | ATU2AF65A; RNA binding / nucleic acid binding / nucleotide binding | chr4:17294422-17297609 REVERSE |
| soybean_pep | Glyma06g48230.3 | 534 | 87.4 | 90.4 | |
| Medicago_pep | IMGA|Medtr3g013160.2 | 510 | 85.6 | 90.1 | Nucleotide-binding, alpha-beta plait chr03_pseudomolecule_IMGAG_V3 2411504-2404739 E EGN_Mt090430 20090702 |
| grape_pep | GSVIVT01018993001 | 522 | 96.6 | 97.7 | |
| castor_bean_cds | 29646.m001075 | 1086 | 90.6 | 90.6 | splicing factor u2af large subunit, putative |
| castor_bean_pep | 29646.m001075 | 553 | 94.1 | 94.1 | splicing factor u2af large subunit, putative |
| JAT_13201ests | --No_Hits-- | ||||
| KJC_r1 | KJC_c03683 | 1697 | 99.4 | 99.4 |
| JcCA0097961.10 | length: 411 aa. | |||
| IPR000504 | RNA recognition motif, RNP-1 | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| HMMPfam | PF00076 | RRM_1 | 1.3e-17 | 311-380 |
| HMMSmart | SM00360 | no description | 5e-21 | 190-268 310-383 |
| ProfileScan | PS50102 | RRM | 15.630 | 189-272 309-387 |
| IPR006529 | U2 snRNP auxilliary factor, large subunit, splicing factor | |||
| Molecular Function | GO:0003723 | RNA binding | ||
| Cellular Component | GO:0005634 | nucleus | ||
| Biological Process | GO:0006397 | mRNA processing | ||
| HMMTigr | TIGR01642 | U2AF_lg: | 4.2e-87 | 50-410 |
| IPR012677 | Nucleotide-binding, alpha-beta plait | |||
| Molecular Function | GO:0000166 | nucleotide binding | ||
| Gene3D | G3DSA:3.30.70.330 | no description | 6.1e-21 | 188-278 310-385 |
| no_ID | ||||
| HMMPanther | PTHR23139 | RNA-BINDING | 6.2e-45 | 324-410 |
| HMMPanther | PTHR23139:SF9 | SPLICING | 6.2e-45 | 324-410 |
| Seg | seg | seg | NA | 134-144 |
| superfamily | SSF54928 | RNA-binding | 1.2e-15 | 310-385 153-306 |