Jatropha Genome Database

JcCA0081341.10 (JcS_103723.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0081341
Scaffold:
JcS_103723 JcCA0081341(-) =JcCB0997881(-) =JcCA0094361(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl A5AWV8_VITVI 123 80.0 84.3 (tr|A5AWV8) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004804 PE=4 SV=1
Arabidopsis_pep AT1G08360.1 117 77.1 84.3 | Symbols: | 60S ribosomal protein L10A (RPL10aA) | chr1:2636231-2637694 FORWARD
soybean_pep Glyma19g37980.2 123 84.3 85.7  
Medicago_pep IMGA|Medtr3g094120.1 116 77.1 82.9 Ribosomal protein L1 chr03_pseudomolecule_IMGAG_V3 22492153-22496051 E EGN_Mt090430 20090702
grape_pep --No_Hits--        
castor_bean_cds 30055.m001561 67.9 81.3 81.3 60S ribosomal protein L10a, putative
castor_bean_pep 30055.m001559 121 81.4 85.7 60S ribosomal protein L10a, putative
JAT_13201ests gi|268516931|gb|FM892483.1|FM892483 123 86.6 86.6 FM892483 Jatropha curcas embryo 56-70 (DAF) Jatropha curcas cDNA clone rjcaeb0_003046, mRNA sequence
KJC_r1 KJC_s19024 123 86.6 86.6  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0081341.10 length: 70 aa.
IPR002143 Ribosomal protein L1
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0006396 RNA processing    
HMMPfam PF00687 Ribosomal_L1 1.5e-11 9-69
superfamily SSF56808 Ribosomal 1.1e-11 1-70
IPR016094 Ribosomal protein L1, 2-layer alpha/beta-sandwich
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
Gene3D G3DSA:3.30.190.20 no description 1.2e-06 2-58
no_ID  
HMMPanther PTHR23105 RIBOSOMAL 5.4e-33 8-70
HMMPanther PTHR23105:SF4 60S 5.4e-33 8-70