Jatropha Genome Database

JcCA0080851.20  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0080851
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl D7TB05_VITVI 338 91.2 94.5 (tr|D7TB05) Whole genome shotgun sequence of line PN40024, scaffold_10.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00010521001 PE=4 SV=1
Arabidopsis_pep AT1G24260.1 239 70.1 77.7 | Symbols: SEP3, AGL9 | SEP3 (SEPALLATA3); DNA binding / protein binding / transcription factor | chr1:8593790-8595862 REVERSE
soybean_pep Glyma05g28140.1 302 79.6 90.6  
Medicago_pep IMGA|Medtr4g147260.1 296 80.1 90.1 Transcription factor, MADS-box; Transcription factor, K-box chr04_pseudomolecule_IMGAG_V3 36883844-36877638 E EGN_Mt090430 20090702
grape_pep GSVIVT01010521001 338 91.2 94.5  
castor_bean_cds 29929.m004629 654 90.3 90.3 mads box protein, putative
castor_bean_pep 29929.m004629 335 92.8 93.9 mads box protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0080851.20 length: 181 aa.
IPR002487 Transcription factor, K-box
method AccNumber shortName E-value location
Molecular Function GO:0003700 transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF01486 K-box 6.2e-28 24-113
ProfileScan PS51297 K_BOX 15.005 28-119
no_ID  
Coil coil coiled-coil NA 65-86
91-112
HMMPanther PTHR11945 MADS 9.2e-44 1-181
HMMPanther PTHR11945:SF19 MADS 9.2e-44 1-181