| JcS_202053 | JcCB0428661(+) =JcCA0080681(+) |
| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| trembl | B1N668_SOLLC | 1266 | 50.2 | 65.5 | (tr|B1N668) Copia LTR rider OS=Solanum lycopersicum GN=LYC_68t000004 PE=4 SV=1 |
| Arabidopsis_pep | AT4G23160.1 | 334 | 39.9 | 56.5 | | Symbols: | protein kinase family protein | chr4:12129485-12134086 FORWARD |
| soybean_pep | Glyma03g04980.1 | 1080 | 46.3 | 63.2 | |
| Medicago_pep | IMGA|Medtr5g072700.1 | 509 | 33.0 | 49.0 | Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H EGN_Mt090430 20090702 |
| grape_pep | GSVIVT01028612001 | 298 | 37.0 | 51.5 | |
| castor_bean_cds | --No_Hits-- | ||||
| castor_bean_pep | --No_Hits-- | ||||
| JAT_13201ests | --No_Hits-- | ||||
| KJC_r1 | --No_Hits-- |
| JcCA0080681.20 | length: 1596 aa. | |||
| IPR001584 | Integrase, catalytic core | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0003677 | DNA binding | ||
| Biological Process | GO:0015074 | DNA integration | ||
| HMMPfam | PF00665 | rve | 1.8e-27 | 477-592 |
| ProfileScan | PS50994 | INTEGRASE | 23.316 | 472-639 |
| IPR001878 | Zinc finger, CCHC-type | |||
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| Molecular Function | GO:0008270 | zinc ion binding | ||
| ProfileScan | PS50158 | ZF_CCHC | 8.713 | 225-240 |
| IPR012337 | Polynucleotidyl transferase, ribonuclease H fold | |||
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| superfamily | SSF53098 | Ribonuclease | 1e-42 | 469-639 |
| IPR013084 | Zinc finger, CCHC retroviral-type | |||
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| Molecular Function | GO:0008270 | zinc ion binding | ||
| Gene3D | G3DSA:4.10.60.10 | no description | 3.9e-08 | 213-252 |
| IPR013103 | Reverse transcriptase, RNA-dependent DNA polymerase | |||
| HMMPfam | PF07727 | RVT_2 | 1.4e-101 | 827-1076 |
| no_ID | ||||
| Coil | coil | coiled-coil | NA | 1000-1024 |
| Gene3D | G3DSA:3.30.420.10 | no description | 3.2e-31 | 481-644 |
| HMMPanther | PTHR11439 | GAG-POL-RELATED | 0 | 211-1375 |
| Seg | seg | seg | NA | 37-50 88-104 199-217 751-765 1430-1443 |
| superfamily | SSF56672 | DNA/RNA | 6.9e-31 | 826-1275 |
| superfamily | SSF57756 | Retrovirus | 7e-09 | 213-252 |