Jatropha Genome Database

JcCA0080621.20 (JcS_103718.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0080621
Scaffold:
JcS_103718 JcCA0080621(+) =JcCB0108171(+) =JcCB0279701(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl D7TP17_VITVI 418 55.4 65.4 (tr|D7TP17) Whole genome shotgun sequence of line PN40024, scaffold_104.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00010961001 PE=4 SV=1
Arabidopsis_pep AT1G03840.1 267 80.3 85.0 | Symbols: MGP | MGP (Magpie); nucleic acid binding / protein binding / transcription factor/ zinc ion binding | chr1:967596-970058 REVERSE
soybean_pep Glyma19g39640.1 298 69.3 73.7  
Medicago_pep IMGA|Medtr7g130150.1 285 63.3 68.8 Zinc finger, C2H2-type chr07_pseudomolecule_IMGAG_V3 30366409-30363069 E EGN_Mt090430 20090702
grape_pep GSVIVT01010961001 418 55.4 65.4  
castor_bean_cds 29647.m001996 444 89.0 89.0 nucleic acid binding protein, putative
castor_bean_pep 29647.m001996 300 66.0 66.8 nucleic acid binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c12118 85.7 84.9 84.9  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0080621.20 length: 520 aa.
IPR007087 Zinc finger, C2H2-type
method AccNumber shortName E-value location
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 94-114
ProfileScan PS50157 ZINC_FINGER_C2H2_2 10.949 92-114
IPR015880 Zinc finger, C2H2-like
Cellular Component GO:0005622 intracellular    
Molecular Function GO:0008270 zinc ion binding    
HMMSmart SM00355 no description 94 92-114
133-163
168-188
no_ID  
Coil coil coiled-coil NA 474-495
HMMPanther PTHR10593 SERINE/THREONINE-PROTEIN 5.4e-11 131-206
HMMPanther PTHR10593:SF10 UNCHARACTERIZED 5.4e-11 131-206
Seg seg seg NA 19-35
40-54
166-176
216-228
236-252
326-330
387-403
489-494
superfamily SSF57667 C2H2 3.9e-05 150-194
91-116