Jatropha Genome Database

JcCA0080281.40 (JcS_100420.70)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0080281
Scaffold:
JcS_100420 JcCA0232451(+) =JcCA0120961(+) =JcCA0242131(-) =JcCA0080281(+) =JcCB0292741(-) =JcCB0238051(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RD38_RICCO 1157 78.6 87.5 (tr|B9RD38) Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_1609310 PE=3 SV=1
Arabidopsis_pep AT1G02060.1 865 61.4 77.3 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:360918-363050 REVERSE
soybean_pep Glyma12g31790.1 872 62.4 77.0  
Medicago_pep IMGA|Medtr7g041080.1 884 62.7 76.5 Pentatricopeptide repeat chr07_pseudomolecule_IMGAG_V3 10439909-10443722 E EGN_Mt090430 20090702
grape_pep GSVIVT01031674001 911 64.7 77.9  
castor_bean_cds 30174.m008794 1435 84.2 84.2 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 30174.m008794 1157 78.6 87.5 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0080281.40 length: 723 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 5.7e-05 163-191
196-222
232-262
267-295
304-334
339-362
376-403
411-440
453-481
487-516
522-550
659-687
HMMTigr TIGR00756 PPR: 0.00045 161-195
196-231
232-266
267-301
304-338
339-374
375-409
410-444
452-485
486-520
521-555
556-590
658-692
ProfileScan PS51375 PPR 9.635 121-151
159-193
194-229
230-264
265-299
302-336
337-372
373-407
408-442
484-518
450-480
519-553
554-588
656-690
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 1.8e-135 76-687
Seg seg seg NA 72-89
superfamily SSF48452 TPR-like 8.2e-13 336-710
105-332