Jatropha Genome Database

JcCA0079611.20 (JcS_101661.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0079611
Scaffold:
JcS_101661 JcCA0237241(+) =JcCA0153811(-) =JcCA0079611(+) =JcCA0270601(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9SJF1_RICCO 798 92.9 96.2 (tr|B9SJF1) Alpha-amylase, putative OS=Ricinus communis GN=RCOM_0526780 PE=4 SV=1
Arabidopsis_pep AT1G69830.1 491 61.1 73.7 | Symbols: ATAMY3, AMY3 | AMY3 (ALPHA-AMYLASE-LIKE 3); alpha-amylase | chr1:26288518-26293003 REVERSE
soybean_pep Glyma08g26860.1 750 89.5 94.1  
Medicago_pep IMGA|Medtr7g012510.1 402 72.3 81.8 Alpha amylase, catalytic region; Alpha-amylase beta-sheet, C-terminal chr07_pseudomolecule_IMGAG_V3 3265803-3252876 H EGN_Mt090430 20090702
grape_pep GSVIVT01032922001 776 89.0 94.6  
castor_bean_cds 29630.m000833 1251 88.4 88.4 alpha-amylase, putative
castor_bean_pep 29630.m000833 798 92.9 96.2 alpha-amylase, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c01778 60.0 84.6 84.6  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0079611.20 length: 392 aa.
IPR006047 Glycosyl hydrolase, family 13, catalytic domain
method AccNumber shortName E-value location
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0005975 carbohydrate metabolic process    
Molecular Function GO:0043169 cation binding    
HMMPfam PF00128 Alpha-amylase 2.1e-22 22-307
IPR006589 Glycosyl hydrolase, family 13, subfamily, catalytic domain
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0005975 carbohydrate metabolic process    
Molecular Function GO:0043169 cation binding    
HMMSmart SM00642 no description 5.4e-32 1-326
IPR012850 Alpha-amylase, C-terminal beta-sheet
Molecular Function GO:0004556 alpha-amylase activity    
Molecular Function GO:0005509 calcium ion binding    
Biological Process GO:0005975 carbohydrate metabolic process    
HMMPfam PF07821 Alpha-amyl_C2 9.1e-21 327-390
HMMSmart SM00810 no description 2e-07 327-391
IPR013781 Glycoside hydrolase, subgroup, catalytic core
Molecular Function GO:0003824 catalytic activity    
Biological Process GO:0005975 carbohydrate metabolic process    
Molecular Function GO:0043169 cation binding    
Gene3D G3DSA:3.20.20.80 no description 1.8e-82 1-334
IPR017853 Glycoside hydrolase, catalytic core
superfamily SSF51445 (Trans)glycosidases 3e-67 1-357
no_ID  
HMMPanther PTHR10357 AMYLASE 2.7e-139 1-360
HMMPanther PTHR10357:SF9 ALPHA-AMYLASE 2.7e-139 1-360