Jatropha Genome Database

JcCA0078491.20 (JcS_101451.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0078491
Scaffold:
JcS_101451 JcCD0100505(+) =JcCA0078491(+) =JcCB0071301(+) =JcCB0293391(-) =JcPR02FS8QW(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B9RWA7_RICCO 330 84.3 90.3 (tr|B9RWA7) Serine palmitoyltransferase I, putative OS=Ricinus communis GN=RCOM_1176940 PE=4 SV=1
Arabidopsis_pep AT4G36480.2 290 72.4 84.3 | Symbols: ATLCB1, LCB1, EMB2779, FBR11 | ATLCB1 (LONG-CHAIN BASE1); protein binding / serine C-palmitoyltransferase | chr4:17218598-17221124 FORWARD
soybean_pep Glyma17g35800.1 296 75.1 85.9  
Medicago_pep IMGA|Medtr5g080310.1 300 74.6 87.0 Aminotransferase, class I and II; chr05_pseudomolecule_IMGAG_V3 30042155-30035289 F EGN_Mt090430 20090702
grape_pep GSVIVT01000259001 316 79.9 88.0  
castor_bean_cds 29983.m003305 622 89.2 89.2 serine palmitoyltransferase I, putative
castor_bean_pep 29983.m003305 330 84.3 90.3 serine palmitoyltransferase I, putative
JAT_13201ests gi|268522287|gb|FM894432.1|FM894432 351 100.0 100.0 FM894432 Jatropha curcas embryo 71-95 (DAF) Jatropha curcas cDNA clone rjcpga0_004781, mRNA sequence
KJC_r1 KJC_c09371 686 99.2 99.2  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0078491.20 length: 221 aa.
IPR004839 Aminotransferase, class I/II
method AccNumber shortName E-value location
Biological Process GO:0009058 biosynthetic process    
Molecular Function GO:0016769 transferase activity, transferring nitrogenous groups    
Molecular Function GO:0030170 pyridoxal phosphate binding    
HMMPfam PF00155 Aminotran_1_2 1.1e-21 34-216
IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.40.640.10 no description 8.5e-46 34-202
IPR015424 Pyridoxal phosphate-dependent transferase, major domain
superfamily SSF53383 PLP-dependent 7.2e-34 34-219
no_ID  
Coil coil coiled-coil NA 61-82
HMMPanther PTHR13693 CLASS 1.2e-103 35-218
HMMPanther PTHR13693:SF2 SERINE 1.2e-103 35-218
Seg seg seg NA 16-34
181-192