Jatropha Genome Database

JcCA0077451.10 (JcS_100419.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0077451
Scaffold:
JcS_100419 JcCA0225811(+) =JcCA0264101(-) =JcCA0077451(+) =JcCA0136621(-) =JcCB0506361(+) =JcCA0266291(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9H7H8_POPTR 502 71.8 79.4 (tr|B9H7H8) Chromatin remodeling complex subunit OS=Populus trichocarpa GN=CHB904 PE=4 SV=1
Arabidopsis_pep AT1G21700.1 391 57.1 71.0 | Symbols: ATSWI3C, CHB4 | ATSWI3C (SWITCH/SUCROSE NONFERMENTING 3C); DNA binding | chr1:7620156-7623978 REVERSE
soybean_pep Glyma06g12170.1 448 64.0 76.5  
Medicago_pep IMGA|Medtr3g100590.1 226 67.5 76.9 SWIRM chr03_pseudomolecule_IMGAG_V3 24121442-24123661 E EGN_Mt090430 20090702
grape_pep GSVIVT01008831001 469 67.8 78.5  
castor_bean_cds 29648.m002006 712 88.1 88.1 DNA binding protein, putative
castor_bean_pep 29648.m002006 435 80.2 86.4 DNA binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c03845 1328 98.7 98.7  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0077451.10 length: 553 aa.
IPR001005 SANT, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMSmart SM00717 no description 4.5e-11 380-428
IPR007526 SWIRM
HMMPfam PF04433 SWIRM 1e-12 172-247
ProfileScan PS50934 SWIRM 15.747 158-256
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 1.1e-11 379-429
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 1.3e-08 383-424
IPR017884 SANT, eukarya
ProfileScan PS51293 SANT 21.256 379-430
no_ID  
HMMPanther PTHR12802 SWI/SNF 2.5e-98 185-465
HMMPanther PTHR12802:SF4 SWI/SNF 2.5e-98 185-465
Seg seg seg NA 16-47
95-112
465-479