Jatropha Genome Database

JcCA0076121.10 (JcS_100088.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0076121
Scaffold:
JcS_100088 JcCB0551591(-) =JcCB0087221(-) =JcCB0294291(-) =JcCA0076121(+) =JcCA0317171(-) =JcCB0615491(-) =JcCB0292291(-) =JcCB0102141(+) =JcPR04ISYPF(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl D7SNG3_VITVI 114 77.1 81.4 (tr|D7SNG3) Whole genome shotgun sequence of line PN40024, scaffold_61.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00031548001 PE=4 SV=1
Arabidopsis_pep AT5G12410.1 105 72.1 79.4 | Symbols: | THUMP domain-containing protein | chr5:4021974-4023950 REVERSE
soybean_pep Glyma11g01830.1 105 70.0 80.0  
Medicago_pep IMGA|Medtr5g009030.1 105 68.6 80.0 THUMP chr05_pseudomolecule_IMGAG_V3 1873897-1878562 F EGN_Mt090430 20090702
grape_pep GSVIVT01031548001 114 77.1 81.4  
castor_bean_cds 30169.m006482 424 87.0 87.0 thump domain protein, putative
castor_bean_pep 30169.m006482 111 75.7 80.0 thump domain protein, putative
JAT_13201ests gi|268517599|gb|FM889310.1|FM889310 613 97.4 97.4 FM889310 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002941, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0076121.10 length: 142 aa.
IPR004114 THUMP
method AccNumber shortName E-value location
HMMPfam PF02926 THUMP 0.00024 93-124
ProfileScan PS51165 THUMP 8.918 1-125
no_ID  
HMMPanther PTHR13452 THUMP 4.1e-05 99-138
Seg seg seg NA 13-25
107-118