Jatropha Genome Database

JcCA0075421.10 (JcS_100114.50)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0075421
Scaffold:
JcS_100114 JcCA0107311(-) =JcCB0186601(+) =JcCB0249501(+) =JcCA0075421(+) =JcCB0173091(-) =JcCA0254771(-) =JcCB0082241(-) =JcCB0704851(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B7FMB2_MEDTR 184 97.8 100.0 (tr|B7FMB2) Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1
Arabidopsis_pep AT1G47830.1 177 92.5 97.8 | Symbols: | clathrin coat assembly protein, putative | chr1:17613346-17614784 REVERSE
soybean_pep Glyma14g40430.2 183 95.7 100.0  
Medicago_pep IMGA|Medtr1g031130.1 184 97.8 100.0 Longin-like chr01_pseudomolecule_IMGAG_V3 7487370-7484618 E EGN_Mt090430 20090702
grape_pep GSVIVT01018785001 184 96.8 98.9  
castor_bean_cds 30170.m014177 381 92.4 92.4 clathrin coat assembly protein ap17, putative
castor_bean_pep 30170.m014177 184 97.8 100.0 clathrin coat assembly protein ap17, putative
JAT_13201ests gi|262090947|gb|GT229305.1|GT229305 488 98.2 98.2 JC870 Jatropha seeds from fruits at three stages of maturation Jatropha curcas cDNA clone PL21SE.D07.scf 5', mRNA sequence
KJC_r1 KJC_c05526 488 98.2 98.2  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0075421.10 length: 99 aa.
IPR011012 Longin-like
method AccNumber shortName E-value location
Biological Process GO:0006810 transport    
superfamily SSF64356 SNARE-like 1.3e-28 7-99
IPR016635 Adaptor protein complex, sigma subunit
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008565 protein transporter activity    
Biological Process GO:0015031 protein transport    
HMMPIR PIRSF015588 Adaptor 6.6e-33 1-99
no_ID  
Gene3D G3DSA:3.30.450.60 no description 2.7e-29 7-99
HMMPanther PTHR11753 CLATHRIN 9.4e-63 3-99
HMMPanther PTHR11753:SF6 CLATHRIN 9.4e-63 3-99
HMMPfam PF01217 Clat_adaptor_s 7.9e-36 7-98