Jatropha Genome Database

JcCA0071061.10 (JcS_103668.10)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0071061
Scaffold:
JcS_103668 JcCA0071061(+) =JcCA0149411(-) =JcCB0175381(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl B0FBS2_9ROSI 946 62.6 74.7 (tr|B0FBS2) Putative uncharacterized protein OS=Vitis hybrid cultivar PE=4 SV=1
Arabidopsis_pep AT4G23160.1 459 45.1 63.8 | Symbols: | protein kinase family protein | chr4:12129485-12134086 FORWARD
soybean_pep Glyma10g10160.1 804 52.1 66.5  
Medicago_pep IMGA|Medtr4g080020.1 524 48.1 66.1 Polynucleotidyl transferase, Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3 16287611-16283185 H EGN_Mt090430 20090702
grape_pep GSVIVT01012382001 233 52.0 72.3  
castor_bean_cds --No_Hits--        
castor_bean_pep --No_Hits--        
JAT_13201ests gi|268520222|gb|FM890070.1|FM890070 52.0 89.1 89.1 FM890070 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003862, mRNA sequence
KJC_r1 KJC_c04660 888 94.1 94.1  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0071061.10 length: 1367 aa.
IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase
method AccNumber shortName E-value location
HMMPfam PF07727 RVT_2 2.8e-97 884-1128
no_ID  
HMMPanther PTHR11439 GAG-POL-RELATED 6.2e-302 31-1364
Seg seg seg NA 72-87
157-169
192-212
267-317
336-358
366-379
431-441
502-522
740-772
1045-1057
1248-1257
superfamily SSF56672 DNA/RNA 5.5e-39 883-1318