Jatropha Genome Database

JcCA0070381.30 (JcS_103667.10)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0070381
Scaffold:
JcS_103667 JcCA0070381(-) =JcCB0342441(+) =JcCB0391751(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl Q9ZRJ0_TOBAC 106 63.9 77.1 (tr|Q9ZRJ0) Retrotransposon Tto1 DNA OS=Nicotiana tabacum PE=4 SV=1
Arabidopsis_pep --No_Hits--        
soybean_pep Glyma12g20850.1 80.9 58.8 76.5  
Medicago_pep --No_Hits--        
grape_pep --No_Hits--        
castor_bean_cds --No_Hits--        
castor_bean_pep --No_Hits--        
JAT_13201ests gi|268518200|gb|FM888474.1|FM888474 559 91.1 91.1 FM888474 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_001895, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0070381.30 length: 212 aa.
IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase
method AccNumber shortName E-value location
HMMPfam PF07727 RVT_2 1.9e-13 78-139
no_ID  
HMMPanther PTHR11439 GAG-POL-RELATED 6.5e-15 78-138
Seg seg seg NA 184-196