Jatropha Genome Database

JcCA0066791.10 (JcS_102133.20)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0066791
Scaffold:
JcS_102133 JcCB0257561(+) =JcCA0066791(+) =JcCB0462581(-) =JcCB0360851(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl O82276_ARATH 260 39.4 55.9 (tr|O82276) Putative non-LTR retroelement reverse transcriptase OS=Arabidopsis thaliana GN=At2g31080 PE=2 SV=1
Arabidopsis_pep AT2G01050.1 92.8 37.8 49.6 | Symbols: | nucleic acid binding / zinc ion binding | chr2:68337-69884 REVERSE
soybean_pep Glyma19g45390.1 163 30.7 48.1  
Medicago_pep IMGA|Medtr8g053420.1 216 37.3 55.4 RNA-directed DNA polymerase (Reverse transcriptase) chr08_pseudomolecule_IMGAG_V3 12119249-12120974 H EGN_Mt090430 20090702
grape_pep GSVIVT01004252001 80.5 24.4 45.8  
castor_bean_cds --No_Hits--        
castor_bean_pep 29739.m003619 87.0 26.7 48.7 conserved hypothetical protein
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0066791.10 length: 1566 aa.
IPR000477 RNA-directed DNA polymerase (reverse transcriptase)
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0003964 RNA-directed DNA polymerase activity    
Biological Process GO:0006278 RNA-dependent DNA replication    
HMMPfam PF00078 RVT_1 3.6e-28 957-1170
ProfileScan PS50878 RT_POL 9.798 912-1171
IPR001878 Zinc finger, CCHC-type
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50158 ZF_CCHC 8.581 155-168
IPR015706 RNA-directed DNA polymerase (reverse transcriptase), related
HMMPanther PTHR19446 REVERSE 6e-90 985-1366
no_ID  
HMMPanther PTHR19446:SF34 NON-LTR 6e-90 985-1366
Seg seg seg NA 360-391
427-438
447-462
522-531
705-722
836-852
978-993
1189-1201
1397-1409
1419-1431
1456-1472
1475-1494
superfamily SSF56672 DNA/RNA 4.7e-07 981-1171