Jatropha Genome Database

JcCA0066751.20 (JcS_103524.40)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0066751
Scaffold:
JcS_103524 JcCA0308281(+) =JcCA0249211(+) =JcCA0066751(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl C0LE64_9ROSI 620 100.0 100.0 (tr|C0LE64) DNA-directed RNA polymerase OS=Jatropha curcas GN=rpoC2 PE=3 SV=1
Arabidopsis_pep ATCG00170.1 513 86.3 91.7 | Symbols: RPOC2 | RNA polymerase beta' subunit-2 | chrC:15938-20068 REVERSE
soybean_pep Glyma02g38600.1 233 75.9 85.5  
Medicago_pep IMGA|Medtr7g143380.1 410 82.7 89.7 DNA-directed RNA polymerase subunit beta'', putative chr07_pseudomolecule_IMGAG_V3 34402054-34400451 E EGN_Mt090430 20090702
grape_pep GSVIVT01030958001 57.4 70.3 86.5  
castor_bean_cds 29923.m000786 1193 94.6 94.6 DNA-directed RNA polymerase beta chain, putative
castor_bean_pep 29923.m000786 493 91.1 94.1 DNA-directed RNA polymerase beta chain, putative
JAT_13201ests gi|268518823|gb|FM889066.1|FM889066 1112 99.6 99.6 FM889066 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002627, mRNA sequence
KJC_r1 KJC_c00025 1800 99.9 99.9  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0066751.20 length: 303 aa.
IPR007081 RNA polymerase Rpb1, domain 5
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0003899 DNA-directed RNA polymerase activity    
Biological Process GO:0006350 transcription    
HMMPfam PF04998 RNA_pol_Rpb1_5 6.6e-07 123-208
no_ID  
HMMPanther PTHR19376 DNA-DIRECTED 3.7e-192 1-302
HMMPanther PTHR19376:SF1 DNA-DIRECTED 3.7e-192 1-302
superfamily SSF64484 beta 4.2e-47 59-267