Jatropha Genome Database

JcCA0062551.10 (JcS_101045.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0062551
Scaffold:
JcS_101045 JcCB0131991(-) =JcCB0649801(-) =JcCA0062551(+) =JcCB0799431(+) =JcCD0091324(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9N009_POPTR 747 67.5 79.9 (tr|B9N009) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_782989 PE=4 SV=1
Arabidopsis_pep AT1G23450.1 620 56.7 72.2 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr1:8324698-8326697 FORWARD
soybean_pep Glyma08g39320.1 609 55.5 72.0  
Medicago_pep IMGA|Medtr7g096950.1 261 29.7 51.7 Pentatricopeptide repeat chr07_pseudomolecule_IMGAG_V3 21831382-21828916 E EGN_Mt090430 20090702
grape_pep GSVIVT01013772001 669 61.9 74.3  
castor_bean_cds 29631.m001012 985 83.9 83.9 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 29631.m001012 683 70.8 78.3 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0062551.10 length: 538 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.0041 21-47
50-78
152-178
225-246
254-283
357-386
391-418
429-451
HMMTigr TIGR00756 PPR: 0.15 49-83
151-185
253-287
356-390
391-426
427-462
ProfileScan PS51375 PPR 8.287 47-81
16-46
82-116
149-183
118-148
251-285
220-250
354-388
323-353
286-322
389-419
425-459
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 5.2e-162 3-536
Seg seg seg NA 293-311
434-450
superfamily SSF48452 TPR-like 7.9e-09 221-520
16-173