Jatropha Genome Database

JcCA0061381.20  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0061381
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)
Posi
(%)
Definition
trembl Q9ZRJ0_TOBAC 421 49.6 58.7 (tr|Q9ZRJ0) Retrotransposon Tto1 DNA OS=Nicotiana tabacum PE=4 SV=1
Arabidopsis_pep --No_Hits--        
soybean_pep Glyma08g26190.1 155 33.2 50.2  
Medicago_pep IMGA|Medtr8g044140.1 103 29.6 45.2 Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold chr08_pseudomolecule_IMGAG_V3 9732923-9735744 H EGN_Mt090430 20090702
grape_pep GSVIVT01028612001 163 36.4 48.8  
castor_bean_cds --No_Hits--        
castor_bean_pep --No_Hits--        
JAT_13201ests gi|268519952|gb|FM889800.1|FM889800 400 87.7 87.7 FM889800 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_003537, mRNA sequence
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0061381.20 length: 447 aa.
IPR001584 Integrase, catalytic core
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0015074 DNA integration    
HMMPfam PF00665 rve 9.6e-12 125-174
ProfileScan PS50994 INTEGRASE 9.933 127-186
IPR012337 Polynucleotidyl transferase, ribonuclease H fold
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF53098 Ribonuclease 1.8e-19 79-183
no_ID  
Gene3D G3DSA:3.30.420.10 no description 3.6e-11 105-182
HMMPanther PTHR11439 GAG-POL-RELATED 2.3e-62 41-394
Seg seg seg NA 190-196
327-342