Jatropha Genome Database

JcCA0045971.20 (JcS_201094.20)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0045971
Scaffold:
JcS_201094 JcCD0206735(-) =JcCD0191519(+) =JcCA0045971(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9IBA4_POPTR 974 73.6 87.1 (tr|B9IBA4) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_573349 PE=4 SV=1
Arabidopsis_pep AT5G48910.1 863 65.3 79.8 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:19832969-19834909 REVERSE
soybean_pep Glyma11g33310.1 866 64.3 79.2  
Medicago_pep IMGA|Medtr6g069810.1 506 41.5 61.9 Pentatricopeptide repeat chr06_pseudomolecule_IMGAG_V3 13009873-13018493 H EGN_Mt090430 20090702
grape_pep GSVIVT01015466001 543 44.2 65.7  
castor_bean_cds 30204.m001799 478 82.8 82.8 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 30204.m001799 437 76.6 89.1 pentatricopeptide repeat-containing protein, putative
JAT_13201ests gi|268518677|gb|FM888920.1|FM888920 50.1 96.6 96.6 FM888920 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002440, mRNA sequence
KJC_r1 KJC_c09426 985 99.1 99.1  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0045971.20 length: 644 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.032 206-234
237-264
310-335
339-369
374-401
411-435
HMMTigr TIGR00756 PPR: 1.7 82-122
123-157
206-236
237-271
307-338
339-373
374-409
410-441
476-510
ProfileScan PS51375 PPR 7.026 80-119
121-155
156-186
235-269
204-234
337-371
305-335
372-407
408-438
440-470
474-508
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 3.2e-274 17-644
HMMPanther PTHR10483:SF4 SELENIUM-BINDING 3.2e-274 17-644
Seg seg seg NA 418-431
superfamily SSF48452 TPR-like 2.7e-31 130-505