| JcS_200855 | JcCB0594321(+) =JcCB0083701(+) =JcCA0045571(+) |
| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| trembl | Q9ZRJ0_TOBAC | 1371 | 65.9 | 79.4 | (tr|Q9ZRJ0) Retrotransposon Tto1 DNA OS=Nicotiana tabacum PE=4 SV=1 |
| Arabidopsis_pep | AT4G23160.1 | 140 | 40.1 | 58.8 | | Symbols: | protein kinase family protein | chr4:12129485-12134086 FORWARD |
| soybean_pep | Glyma03g04980.1 | 483 | 35.1 | 53.2 | |
| Medicago_pep | IMGA|Medtr5g072700.1 | 272 | 29.7 | 44.1 | Retrotransposon gag protein; Polynucleotidyl transferase, Ribonuclease H fold chr05_pseudomolecule_IMGAG_V3 25937763-25933415 H EGN_Mt090430 20090702 |
| grape_pep | GSVIVT01028612001 | 320 | 30.6 | 51.4 | |
| castor_bean_cds | --No_Hits-- | ||||
| castor_bean_pep | --No_Hits-- | ||||
| JAT_13201ests | gi|268518791|gb|FM889034.1|FM889034 | 666 | 94.2 | 94.2 | FM889034 Jatropha curcas embryo 35-55 (DAF) Jatropha curcas cDNA clone rjcfea0_002587, mRNA sequence |
| KJC_r1 | --No_Hits-- |
| JcCA0045571.20 | length: 1321 aa. | |||
| IPR001584 | Integrase, catalytic core | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| Molecular Function | GO:0003677 | DNA binding | ||
| Biological Process | GO:0015074 | DNA integration | ||
| HMMPfam | PF00665 | rve | 3.4e-30 | 483-595 |
| ProfileScan | PS50994 | INTEGRASE | 23.749 | 472-642 |
| IPR001878 | Zinc finger, CCHC-type | |||
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| Molecular Function | GO:0008270 | zinc ion binding | ||
| ProfileScan | PS50158 | ZF_CCHC | 9.455 | 235-250 |
| IPR012337 | Polynucleotidyl transferase, ribonuclease H fold | |||
| Molecular Function | GO:0003676 | nucleic acid binding | ||
| superfamily | SSF53098 | Ribonuclease | 6.3e-40 | 473-634 |
| IPR013103 | Reverse transcriptase, RNA-dependent DNA polymerase | |||
| HMMPfam | PF07727 | RVT_2 | 7.6e-65 | 842-987 |
| no_ID | ||||
| Coil | coil | coiled-coil | NA | 822-843 |
| Gene3D | G3DSA:3.30.420.10 | no description | 1.9e-25 | 500-622 |
| HMMPanther | PTHR11439 | GAG-POL-RELATED | 1.7e-253 | 7-986 |
| Seg | seg | seg | NA | 847-860 1075-1083 |
| superfamily | SSF56672 | DNA/RNA | 1.5e-07 | 841-975 |