Jatropha Genome Database

JcCA0045351.20 (JcS_107818.20)  /TE
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0045351
Scaffold:
JcS_107818 JcCA0045351(+) =JcCB0648941(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl A5BNR5_VITVI 1086 61.8 74.4 (tr|A5BNR5) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_035665 PE=4 SV=1
Arabidopsis_pep AT4G23160.1 484 45.6 62.0 | Symbols: | protein kinase family protein | chr4:12129485-12134086 FORWARD
soybean_pep Glyma10g10160.1 553 49.3 65.9  
Medicago_pep IMGA|Medtr4g079130.1 591 49.9 66.0 Polynucleotidyl transferase, Ribonuclease H fold chr04_pseudomolecule_IMGAG_V3 15761100-15765439 H EGN_Mt090430 20090702
grape_pep GSVIVT01017026001 275 37.1 55.7  
castor_bean_cds --No_Hits--        
castor_bean_pep 29669.m000842 103 37.3 58.2 conserved hypothetical protein
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c12872 54.0 94.3 94.3  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0045351.20 length: 1499 aa.
IPR001584 Integrase, catalytic core
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0015074 DNA integration    
HMMPfam PF00665 rve 2.3e-28 568-682
ProfileScan PS50994 INTEGRASE 21.101 566-730
IPR005162 Retrotransposon gag protein
HMMPfam PF03732 Retrotrans_gag 2.7e-10 99-203
IPR012337 Polynucleotidyl transferase, ribonuclease H fold
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF53098 Ribonuclease 1.9e-41 561-722
IPR013103 Reverse transcriptase, RNA-dependent DNA polymerase
HMMPfam PF07727 RVT_2 4e-97 1011-1255
no_ID  
Gene3D G3DSA:3.30.420.10 no description 4.5e-25 569-735
HMMPanther PTHR11439 GAG-POL-RELATED 0 43-1491
Seg seg seg NA 529-534
800-813
852-882
889-911
945-956
1194-1210
1271-1282
superfamily SSF56672 DNA/RNA 8.6e-43 1010-1445
superfamily SSF57756 Retrovirus 7.6e-07 250-303