Jatropha Genome Database

JcCA0045271.30  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0045271
Scaffold:
No data.
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RM41_RICCO 180 77.0 86.7 (tr|B9RM41) ATP binding protein, putative OS=Ricinus communis GN=RCOM_1077610 PE=4 SV=1
Arabidopsis_pep AT3G03300.2 133 61.9 74.3 | Symbols: DCL2 | DCL2 (DICER-LIKE 2); ATP binding / ATP-dependent helicase/ RNA binding / double-stranded RNA binding / helicase/ nucleic acid binding / ribonuclease III | chr3:768020-774525 REVERSE
soybean_pep Glyma09g02930.1 130 58.0 75.9  
Medicago_pep IMGA|Medtr2g129960.1 132 59.5 79.3 Argonaute and Dicer protein, PAZ; ATP-requiring DNA helicase RecQ; Ribonuclease III, bacterial; chr02_pseudomolecule_IMGAG_V3 31566180-31555830 H EGN_Mt090430 20090702
grape_pep GSVIVT01019052001 143 67.3 81.4  
castor_bean_cds 29929.m004545 97.6 84.8 84.8 ATP binding protein, putative
castor_bean_pep 29929.m004545 180 77.0 86.7 ATP binding protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0045271.30 length: 122 aa.
IPR000999 Ribonuclease III
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0004525 ribonuclease III activity    
Biological Process GO:0006396 RNA processing    
ProfileScan PS50142 RNASE_3_2 9.959 1-18
superfamily SSF69065 RNase 8.5e-08 1-44
IPR001159 Double-stranded RNA binding
Molecular Function GO:0003725 double-stranded RNA binding    
Cellular Component GO:0005622 intracellular    
HMMPfam PF00035 dsrm 6.8e-05 45-109
ProfileScan PS50137 DS_RBD 10.339 44-111
no_ID  
HMMPanther PTHR14950 HELICASE-RELATED 2.3e-16 1-117
HMMPanther PTHR14950:SF3 DICER-1 2.3e-16 1-117
superfamily SSF54768 dsRNA-binding 9.3e-06 37-112