Jatropha Genome Database

JcCA0044231.20 (JcS_109388.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0044231
Scaffold:
JcS_109388 JcCB0290201(-) =JcCA0044231(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9HGK2_POPTR 696 74.8 87.0 (tr|B9HGK2) Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_764361 PE=4 SV=1
Arabidopsis_pep AT5G08310.1 542 57.6 78.6 | Symbols: | pentatricopeptide (PPR) repeat-containing protein | chr5:2670134-2675254 REVERSE
soybean_pep Glyma20g23810.1 632 67.4 82.3  
Medicago_pep IMGA|Medtr1g143520.1 627 68.5 82.3 Pentatricopeptide repeat chr01_pseudomolecule_IMGAG_V3 31704431-31701066 E EGN_Mt090430 20090702
grape_pep GSVIVT01026181001 560 69.2 81.5  
castor_bean_cds 30146.m003515 369 80.4 80.4 pentatricopeptide repeat-containing protein, putative
castor_bean_pep 30146.m003515 501 78.0 88.9 pentatricopeptide repeat-containing protein, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0044231.20 length: 440 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.019 77-105
109-137
181-201
212-237
246-275
HMMTigr TIGR00756 PPR: 0.2 77-107
108-142
143-177
211-245
246-280
281-312
ProfileScan PS51375 PPR 6.358 106-140
75-105
44-74
141-175
209-243
176-206
244-278
279-309
311-341
345-379
no_ID  
HMMPanther PTHR10483 PENTATRICOPEPTIDE 2.9e-182 1-429
HMMPanther PTHR10483:SF4 SELENIUM-BINDING 2.9e-182 1-429
superfamily SSF48452 TPR-like 9.3e-31 43-350