Jatropha Genome Database

JcCA0044211.10 (JcS_103846.30)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0044211
Scaffold:
JcS_103846 JcPR04GYYPM(+) =JcCB0428411(+) =JcCA0044211(-)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl B9RVA8_RICCO 1004 42.2 58.1 (tr|B9RVA8) Receptor-kinase, putative OS=Ricinus communis GN=RCOM_0901450 PE=4 SV=1
Arabidopsis_pep AT1G58190.1 802 37.4 53.2 | Symbols: AtRLP9 | AtRLP9 (Receptor Like Protein 9); protein binding | chr1:21540720-21547996 FORWARD
soybean_pep Glyma18g50840.1 406 41.4 56.2  
Medicago_pep IMGA|Medtr3g166660.1 453 35.2 48.2 Leucine-rich repeat, N-terminal chr03_pseudomolecule_IMGAG_V3 43659587-43667008 E EGN_Mt090430 20090702
grape_pep GSVIVT01017399001 521 45.2 58.1  
castor_bean_cds 29841.m002902 167 84.4 84.4 serine-threonine protein kinase, plant-type, putative
castor_bean_pep 29841.m002899 1004 42.2 58.1 receptor-kinase, putative
JAT_13201ests --No_Hits--        
KJC_r1 KJC_c06022 331 85.7 85.7  
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0044211.10 length: 1508 aa.
IPR001611 Leucine-rich repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00560 LRR_1 0.062 6-28
30-52
127-147
225-247
562-582
585-603
813-835
862-884
1207-1224
1253-1274
1391-1409
1411-1433
1436-1457
IPR003591 Leucine-rich repeat, typical subtype
HMMSmart SM00369 no description 9.5 4-27
28-52
272-296
418-442
558-581
582-606
762-786
811-835
860-883
884-908
909-930
1135-1158
1274-1298
1409-1432
1433-1457
IPR013210 Leucine-rich repeat-containing N-terminal domain, type 2
HMMPfam PF08263 LRRNT_2 9.8e-09 708-751
IPR020474 Toll-like receptor, leucine rich repeat-containing
FPrintScan PR00019 LEURICHRPT 2e-05 585-598
860-873
no_ID  
Gene3D G3DSA:3.80.10.10 no description 3.7e-26 1-191
199-360
363-652
703-901
902-1104
1106-1324
1391-1504
HMMPanther PTHR23258 SERINE-THREONINE 1.2e-100 816-1505
HMMPanther PTHR23258:SF473LEUCINE-RICH REPEAT 1.2e-100 816-1505
HMMSmart SM00365 no description 1.5e+02 4-30
52-70
582-608
762-788
811-840
860-886
909-936
1183-1206
1433-1456
Seg seg seg NA 44-60
879-893
926-932
1374-1389
superfamily SSF52047 RNI-like 1.8e-58 226-641
superfamily SSF52058 L 1.2e-17 734-1126
1207-1504
1-263
1090-1201