Jatropha Genome Database

JcCA0043901.10 (JcS_100464.10)  
Related links:
Predicted Sequence Links:
Genome Sequence: JcCA0043901
Scaffold:
JcS_100464 JcCA0043901(+) =JcCB0143221(-) =JcCB0469561(-) =JcCA0278261(+) =JcCB0465701(+) =JcCA0312361(+)
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
trembl Q8GUA1_ORYSJ 230 69.9 78.4 (tr|Q8GUA1) MYB27 protein OS=Oryza sativa subsp. japonica GN=myb27 PE=2 SV=1
Arabidopsis_pep AT5G07690.1 225 76.1 84.3 | Symbols: MYB29, ATMYB29, PMG2 | ATMYB29 (ARABIDOPSIS THALIANA MYB DOMAIN PROTEIN 29); DNA binding / transcription factor | chr5:2447090-2448285 FORWARD
soybean_pep Glyma13g05550.1 224 78.7 86.6  
Medicago_pep IMGA|Medtr6g013190.1 221 78.0 85.0 Homeodomain-like; chr06_pseudomolecule_IMGAG_V3 2721503-2724011 E EGN_Mt090430 20090702
grape_pep GSVIVT01011447001 215 78.9 86.2  
castor_bean_cds 30138.m004053 105 85.0 85.0 r2r3-myb transcription factor, putative
castor_bean_pep 29983.m003281 211 73.0 83.3 r2r3-myb transcription factor, putative
JAT_13201ests --No_Hits--        
KJC_r1 --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
JcCA0043901.10 length: 153 aa.
IPR001005 SANT, DNA-binding
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
HMMSmart SM00717 no description 7.7e-16 13-63
66-114
IPR009057 Homeodomain-like
superfamily SSF46689 Homeodomain-like 9.4e-13 14-84
86-146
IPR012287 Homeodomain-related
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0045449 regulation of transcription    
Gene3D G3DSA:1.10.10.60 no description 1e-16 12-64
68-116
IPR014778 Myb, DNA-binding
HMMPfam PF00249 Myb_DNA-binding 6e-16 14-61
67-112
IPR015495 Myb transcription factor
HMMPanther PTHR10641 MYB-RELATED 2.1e-87 3-134
IPR017930 HTH transcriptional regulator, Myb-type, DNA-binding
ProfileScan PS51294 HTH_MYB 14.905 62-116
9-61
no_ID  
HMMPanther PTHR10641:SF30 R2R3-MYB 2.1e-87 3-134